Since it's easy, can you quickly try to if setting tcp_sack sysctl to 0
makes any difference (I made a surgery there, perhaps some bug in there
could cause TCP to recover by RTO multiple times in a row, that should
be visible in tcpdump as well)?
Do you have network namespaces enabled in .config?
Netfilter/iptables involved?
To some specific or "any" other host? How long is "long"?
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