This can be solved by symlinking the config to one designated repo (let's
call it the "master" repo).
I'd just make a small script which I'd run from the "master" repo instead
of saying "git pull":
-- snip --
git pull || exit
for branch in branch1 branch2 branch3; do
cd $branch && git pull .. $branch && cd .. || exit
done
-- snap --
This assumes that you have named the side branches "branch1", "branch2"
and "branch3", and that they are checked out in the subdirectories of the
same name.
Hth,
Dscho
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