I personally feel it is a horrible and stupid thing to do, if by
"version control /etc" you mean to have /.git which controls
/etc/hosts and stuff in place. It would work (git does not
refuse to run as root). But being a *source* control system, we
deliberately refuse to store the full permission bits, so if
your /etc/shadow is mode 0600 while /etc/hosts is mode 0644, you
have to make sure they stay that way after checking things out.
You are much better off to keep /usr/src/rootstuff/.git (and
working tree files are /usr/src/rootstuff/etc/hosts and
friends), have a build procedure (read: Makefile) there, and
version control that source directory. I usually have 'install'
and 'diff' target in that Makefile, so that I can do this:
$ cd /usr/src/rootstuff
$ make diff ;# to see if somebody edited any targets by hand
$ edit etc/hosts
$ git diff ;# to see the source change
$ make diff ;# to see the change I am going to install
$ su
# make install; exit
$ git commit -a -m 'Add a new host.'
Being able to run "diff" before actually doing it is very handy
and useful safety/sanity measure.
Obviously, /usr/src/rootstuff/ should be mode 0770 or stricter,
owned by the operator group; it would contain some sensitive
information.
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